- Academy of Civics and Educational Sciences (ACES)
- CARE Academy Charter School
- Catalyst Preparatory Charter School
- Cayetana Romero Charter School
- City Schools Charter School
- Eastern Navajo Nation Early College High School
- Endless Sky Charter School for Boys
- Explore Academy-Las Cruces
- Foundations Learning Disabilities Center of New Mexico
- International District Success Academy
- Polaris Charter School
- Raices Del Saber Xinachtli Community School
- Res Primae Classical School (RPCS)
- Sandoval Institute of Math and Science @ UNM
- School of Innovation Academy
- Solare Collegiate Charter School
- South Valley Innovation Academy
- Window of Hope Elementary School K-5